! jnl file to make altimetric height anomaly maps.  The anomaly is from the yearly mean.
! This file requires input arguments for lat/lon range and time range

! to run the program in ferret, you will need to type the following line with the various values filled in:

! go fer_alt_ht_yearly_anom time_start time_end lat_min lat_max lon_min lon_max iland con_lev

! time values are entered corresponding to monthly values starting with Jan, 2004 
! iland 0=high res,1=lowres
! con_lev sets the contour and fill levels of the plot.  This is done in the following format:  (lo,hi,delta).  
! More than one can be chosen:  (lo,mid,delta1),(mid,hi,delta2).  See the Ferret Users Manual for more information.
! if no values are entered, the default region is 50S to 25N and 130E to 250E with an average over the 
! entire depth and time region


set mem/size=80
set window/clear
cancel/all data
cancel/all var
cancel/all sym
go set_pixel_size 1024 768

! assigning variables to arguments passed in the go command as well as default values
let lat_min=`$3%-50%`
let lat_max=`$4%25%`
let lon_min=`$5%300%`
let lon_max=`$6%250%`
let time_start=`$1%1%`
let time_end=`$2%13%`
let iland=`$7%1%`
set mode interpolate

set region/z=0:2000/y=`lat_min`:`lat_max`/x=`lon_min`:`lon_max`
define viewport/xlim=.0,.95/ylim=0,1 top
PPL DFLTFNT DR
ppl conpre @P1@DR
ppl axlsze 0.15,.15
ppl axset 1,1,1,1
ppl pen 0,7
ppl pen 1,7
ppl labset .15,.15,.15

use aviso_grid.nc

! setting map scales properly
let beq=if (`lon_min`) eq (`lon_max`) then 1 else 0
if `beq` then
let lon_max=`lon_max`+360
endif
let blm=if (`lon_min`) gt (`lon_max`) then 1 else 0
if `blm` then
let lon_max=`lon_max`+360
endif
define symbol xdeg `lon_max-lon_min`
define symbol ydeg `lat_max-lat_min`
define symbol alasp `($ydeg)/($xdeg)`
set win/asp=($alasp):axis

! begin mapping process

! only map an average if the times are different.  otherwise, map at that time only


! time is the same
let a=if `time_start` eq `time_end` then 1 else 0
if `a` then 
let aviso_anom=aviso[d=1,x=`lon_min`:`lon_max`,y=`lat_min`:`lat_max`,l=`time_start`]-aviso[d=1,x=`lon_min`:`lon_max`,y=`lat_min`:`lat_max`,l=1:48@ave]
! time is different
else
let aviso_anom=aviso[d=1,x=`lon_min`:`lon_max`,y=`lat_min`:`lat_max`,l=`time_start`:`time_end`@ave]-aviso[d=1,x=`lon_min`:`lon_max`,y=`lat_min`:`lat_max`,l=1:48@ave]
endif

let anom_max=aviso_anom[x=@max,y=@max]
let anom_min=aviso_anom[x=@min,y=@min]
let abs_max=ABS(`anom_max`)
let abs_min=ABS(`anom_min`)
! case where anom_max is bigger than anom_min
let maxz=if `abs_max` gt `abs_min` and `abs_max` lt .1 then 1 else 0
if `maxz` then
let lev_max = (int(100*abs_max)+1)/100
let lev_min = (int(-100*abs_max)-1)/100
endif
let maxnz=if `abs_max` gt `abs_min` and `abs_max` gt .1 then 1 else 0
if `maxnz` then
let lev_max=(int(10*anom_max)+1)/10
let lev_min=(int((-10*anom_max))-1)/10
endif
let anom_diff=lev_max-lev_min
let anom_delta=anom_diff/8

! case where anom_min is bigger than anom_max
let minz=if `abs_min` gt `abs_max` and `abs_min` lt .1 then 1 else 0
if `minz` then
let lev_max = (int(100*abs_min)+1)/100
let lev_min = (int(100*anom_min)-1)/100
endif
let minnz=if `abs_min` gt `abs_max` and `abs_min` gt .1 then 1 else 0
if `minnz` then
let lev_max=(int(10*abs_min)+1)/10
let lev_min=(int(10*anom_min)-1)/10
endif
let anom_diff=lev_max-lev_min
let anom_delta=anom_diff/8

let con_lev= $8&"(`lev_min`,`lev_max`,`anom_delta`)"|*>"*"&

fill/set/nolab/pal=centered/lev="`con_lev`"  aviso_anom
ppl shakey 1,,.08,,5,,,,,,
ppl fill
! adding contours
 con/set_up/over/nolab/lev="`con_lev`" aviso_anom
 ppl conset .11,,,,,,,5.7,1.,1
 ppl contour/overlay


! now use etopo6 to add bathymetry
! check zonal range to see if using high or low land resoluion
let rcheck=`lon_max`-`lon_min`
if `rcheck gt 120` then
if `iland eq 0` then
use etopo12_grid.nc
shade/over/nokey/nolab/pal=black/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/lev=(0,10000,10000) btdata12[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
shade/over/nokey/nolab/palette=lightgreyscale/over/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/levels=(-1000,0,1000) btdata12[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
shade/over/nokey/nolab/pal=grey/over/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/lev=(-200,0,200) btdata12[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
endif
if `iland eq 1` then
use etopo12_grid.nc
fill/over/nokey/nolab/palette=black/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/levels=(0,10000,10000) btdata12[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
endif
endif
if `rcheck le 120` then
if `iland eq 0` then
use etopo6_grid.nc
fill/over/nokey/nolab/palette=black/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/levels=(0,10000,10000) btdata[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
fill/over/nokey/nolab/palette=lightgreyscale/over/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/levels=(-1000,0,1000) btdata[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
fill/over/nokey/nolab/palette=grey/over/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/levels=(-200,0,200) btdata[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
else
use etopo6_grid.nc
fill/over/nokey/nolab/palette=black/hlim=`lon_min`:`lon_max`/vlim=`lat_min`:`lat_max`/levels=(0,10000,10000) btdata[y=`lat_min`:`lat_max`,x=`lon_min`:`lon_max`]
endif


endif
say Plot is finished
say To adjust parameters, use the command line to pass arguments
say For this file, the form to pass arguments is
say go fer_alt_ht_yearly_anom time_start time_end lat_min lat_max lon_min lon_max iland con_lev